PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 334aa    MW: 37853 Da    PI: 8.5399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017100.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05174193120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C++C+k+F+r  n++ H+
  CCG017100.1 174 FSCSICSKTFNRYNNMQMHM 193
                  89*****************9 PP

2zf-C2H2130.00031258280123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +C+k F  k + ++H +++
  CCG017100.1 258 FMCRKCSKAFAVKGDWRTHEKNC 280
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-5165197No hitNo description
PROSITE profilePS5015710.492174201IPR007087Zinc finger, C2H2
SMARTSM003550.13174196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM00355190221253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5244278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-6244278No hitNo description
SMARTSM0035573258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGLRNYHVED NNLCFQAPNF IEWLKPSSNS PSPSSSSSSS SLSSVSTQQV QFTNPMSILK  60
LASFFPPQQQ ESTKETIQCL PLLNRLTEKK TLKEEEDMEM QESTVGVKEE KIEKVTVALH  120
IGLPNSGDSG VETGVFDLKE EISMKKNFQG YSFNSESRFW IPTPAQILVG PMQFSCSICS  180
KTFNRYNNMQ MHMWGHGSEF RKGPDSLKGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK  240
DFRTLQTHYK RKHGAKPFMC RKCSKAFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD  300
HIRSFGKGHS PHPSLEGFED EKECVTGSED EFAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045037.10.0PREDICTED: zinc finger protein WIP3 isoform X1
SwissprotQ9SGD11e-132ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9HQX30.0B9HQX3_POPTR; C2H2 family protein
STRINGPOPTR_0009s14590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-129WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]