PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 275aa    MW: 29673.5 Da    PI: 4.4293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017055.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038249272123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C++ F +   Lk+H +  H
  CCG017055.1 249 FSCKSCDRAFGTDGALKSHSQAkH 272
                  89*****************76655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030666.2E-86163No hitNo description
PROSITE profilePS5015710.616249275IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG NESVPLFVKF DEKKLVLGTL  60
SPENIPQLSF DLVFEKEFEL SHNWKNGSVF FCGYQVIPDD DASDFSGDEE DFEFAKADIM  120
KAATAKDKAA KPEKPKATLV EPSIDDDEDD SDEDDSDEDG DSEEGMSLDE DSDDESDSED  180
EETPKKAETS KKRANDSATK TPVSSKKAKT ATPQKTDGKK AGQVTPHPAK GKAAANGNSS  240
KSPKSGGNFS CKSCDRAFGT DGALKSHSQA KHGAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447300.0EF144730.1 Populus trichocarpa clone WS01117_I04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044413.10.0PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I63e-64HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA9P9960.0A9P996_POPTR; Uncharacterized protein
STRINGPOPTR_0009s15160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]