PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016064.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 236aa    MW: 26742.2 Da    PI: 6.0785
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016064.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.31.1e-53561592102
        NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                   +sfw++q   i+k+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltl+sw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  CCG016064.2  56 RQSFWTNQykeIDKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 153
                  589****999999************************************************************************************* PP

        NF-YC  97 prdelk 102
                  pr+++k
  CCG016064.2 154 PREDMK 159
                  **9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3345149IPR009072Histone-fold
PfamPF008083.9E-2177140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-3778155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDQQGYGTNP YQPNQMPAAS NPGSVTGQPA GAQLEQHQLA YQQIHQQQQQ QLQQQRQSFW  60
TNQYKEIDKV TDFKNHSLPL ARIKKIMKAD EDVKMISAEA PVIFARACEM FILELTLQSW  120
NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDMKD EVLASIPRGT MPVGGPVDAL  180
PYCYMPHPHA PQVGTPGMIM GRPVTDPAMY AQQSHPYMAQ HMWPQGSEQQ QSPSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B1e-40701551297NF-YC
4awl_C1e-4070155994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B1e-4070155994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023572.11e-177PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_011023571.11e-177PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B28e-90NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9I7X71e-175B9I7X7_POPTR; HEME ACTIVATED protein 5C
STRINGPOPTR_0013s02580.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-85nuclear factor Y, subunit C9