PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 682aa    MW: 75660.9 Da    PI: 6.5652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015388.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.9e-12332388155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++ ++g
  CCG015388.1 332 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALMYWG 388
                  78*******************87776664446655.77****************9988 PP

2AP245.22.4e-14433482355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG015388.1 433 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 482
                  9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-9332388IPR001471AP2/ERF domain
CDDcd000185.90E-18332396No hitNo description
SuperFamilySSF541714.77E-14332398IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-12333397IPR001471AP2/ERF domain
SMARTSM003801.6E-21333402IPR001471AP2/ERF domain
PROSITE profilePS5103217.029333396IPR001471AP2/ERF domain
PRINTSPR003676.3E-6334345IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-17431490IPR016177DNA-binding domain
CDDcd000181.56E-24431489No hitNo description
PROSITE profilePS5103218.966432490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18432489IPR001471AP2/ERF domain
SMARTSM003808.7E-33432496IPR001471AP2/ERF domain
PfamPF008471.1E-9433482IPR001471AP2/ERF domain
PRINTSPR003676.3E-6472492IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKSMDNDDDH NNHNANWLGF SLSPQMKMEV PSGANHHHQT PSPSAAIPTA IPTGFFHSQL  60
PQLDYGIYYG VDDQGENGGF YSPLPVLPLK SDGSLCMMDA LTRTQPQATM VTTSTPKLED  120
FFGCATMETH HYESNDREAM ALSLDSSPGM YYHEDPDHEP NNQNCLNHLQ QNPRQQQQQQ  180
HQHIQVQHYP CYSNFRNNEV LVGEDAKQMA QASDCSLKLP NMGDDGTTGM KNWVSRNYQG  240
NHAMEQKMLR CMVENGGESG PNISAMAYGD LQCLSLSMSP GSQSSCVTGS MQVSPSVNDC  300
AAMETKKRGP GKVDQKQIVH SKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ  360
SRKGRQGGYD MEEKAARAYD LAALMYWGPS THINFPLENY QNEIEEMKNM TRQEYVAHLR  420
RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF  480
RGVNAVTNFV ITRYDVERIM ASSTLLAGEL ARRNKDIGPC DDASTNHSIP STRNSNGESL  540
PSQNSENESD WKMVLYQSSQ QQLDRKASNV MDNYKTQAFL LSPENVIGID CMSSAHQHEF  600
EDSSKMGAHM SNASSLVTSL SSSREGSPDR AMLFGMPPTA ASKLFASPNG DVSSWIPSAA  660
AGQLRPAVSL PHAPVFAAWT DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999924.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-147CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K1XNS60.0A0A2K1XNS6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-129AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]