PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015288.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 530aa    MW: 58083 Da    PI: 8.0399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015288.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05139161123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ C+k F r  nL+ H r H
  CCG015288.1 139 YICEVCHKGFQRDQNLQLHRRGH 161
                  89*******************88 PP

2zf-C2H2130.00031215237123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H + +
  CCG015288.1 215 WKCDKCSKRYAVQSDWKAHAKIC 237
                  58*****************9987 PP

3zf-C2H210.80.0016245263523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg+ Fsrk+++++H   +
  CCG015288.1 245 DCGTIFSRKDSFVTHRAFC 263
                  8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-6138161No hitNo description
Gene3DG3DSA:3.30.160.602.7E-5138161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741139161IPR007087Zinc finger, C2H2
SMARTSM003550.038139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SMARTSM00355140180210IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4203236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-6210235No hitNo description
SMARTSM00355140215235IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEEEDQRTSK MSNFVQEFED DEQFQSAGDS QHSIGSPNPT ENGGSTPTTS TTSKKKRNLP  60
GNPGKKNLFI LLPKCHGYVQ DNNIFIPKCL TGFKENIHDN QHKNLTRDNL VNNVEVHSFD  120
PDAEVVALSP RTLMATNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR QNTQAKKRVY  180
VCPEPTCVHN DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR  240
EYRCDCGTIF SRKDSFVTHR AFCDALAEEN YKVNQNLAAT GGMLQEQEPF SSSMPSSDAC  300
TNKSAAMNLT ISAVNSDSAL RPLSLNSSGM VMSSNLNPRT SLPLACFSSL DGSNTSPLAV  360
GSSYTSATAL LQKAAVMGAK ISDNSIAPIL FKGFNGYSTT SMNSSGSVPE GSSIDGSNKG  420
PHAANMNGIY LGDTGMFDKN LDPGYPRNSV CQTGFFESPL LMDIENGNAA HALVGEGYMG  480
GSEKMTVDFL GVEPPTGHSA VGRKRNYEGN IMGLGYPNAQ QNLHNLHSDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33211274366Zinc finger protein JACKDAW
5b3h_F4e-33211274366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004342.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ9SCQ61e-102IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FEG20.0A0A3N7FEG2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]