PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013194.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 492aa    MW: 53988.6 Da    PI: 9.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013194.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057395123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  CCG013194.1 73 FVCEICNKGFQRDQNLQLHRRGH 95
                 89*******************88 PP

2zf-C2H212.20.00055149171123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  CCG013194.1 149 WKCEKCSKIYAVQSDWKAHSKTC 171
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-67295No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
PfamPF121717.8E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355260114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-6144169No hitNo description
SMARTSM00355170149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSNSTSLSEE ASVSSGTRLQ EFGSLNPLAS NFSPLQQQQQ KIIKKKRSLP GNPDPDAEVI  60
ALSPKTLLAT HRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKEIK KKAYVCPEPT  120
CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF VTHRAFCDAL AEESARLSAH QLISTDPNAQ ALLLQNPLQA HPISLFSAPN  240
PTHQQQILLQ NPLQAHPISL FSAPNPTHQQ QISLASPWDP PRHHNPSSNN HQNPVHIKPE  300
THNHFQIPPL LQEPPPPALP SHKGLLASTF QSLSNAVTSS AASHHLSATA LLQKAASVGA  360
AQTSVGHSQM TQLDMGELGS AGQVHVNSAS HVAQGPNYNL NSLATWQKSD GLTRDFLGLT  420
GECEDHHVHA GSNSNGRSGG VNASMNVREI LTYTGVVGFH QQQYNERDHS LLKPPGGFGF  480
AQPSASKTWG DC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36145209367Zinc finger protein JACKDAW
5b3h_F6e-36145209367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-138AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032635.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9ZWA61e-113IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLB9H8D50.0B9H8D5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]