PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 298aa    MW: 33304.2 Da    PI: 7.8855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013050.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-055476123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  CCG013050.1 54 YSCSFCNREFRSAQALGGHMNVH 76
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-65181No hitNo description
PROSITE profilePS5015711.5525481IPR007087Zinc finger, C2H2
SMARTSM003550.00285476IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-65477IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLKSQL PAPMKSISGS WEEKAFAEDS SGHLGGCIWP PRSYSCSFCN  60
REFRSAQALG GHMNVHRRDR ARLKQSLSPH NYVFQHQNHI QNSLKPLGSH FPSDQVCTLD  120
NYDLDPKLSV SRTTNIESTL SSYRVSTLSS QEHLSEHAFV SPPSSSFVQE QHKGYPYLHD  180
NLSGSDHSLS VRLHSKPEAE RNQGEVKVTC LNHDKFAATD LFMDLGSVIN SHSLLSPGSC  240
GDEAVSCKRP RTNVSVLSLL VKPRPNDGYI LQSEATGPTS SSNEGIDLEL RLGETPKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124976229superman protein
2l1o_A2e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316269.10.0zinc finger protein 10
TrEMBLB9HT740.0B9HT74_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-26C2H2 family protein