PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 760aa    MW: 82317.2 Da    PI: 8.5647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012993.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-054161323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  CCG012993.1 41 CEICGKGFQRDQNLQLHRRGH 61
                 ******************988 PP

2zf-C2H212.70.00038115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H +t+
  CCG012993.1 115 WKCEKCSKRYAVQSDWKAHSKTC 137
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-53861IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.68E-63861No hitNo description
PROSITE profilePS5015711.4893961IPR007087Zinc finger, C2H2
SMARTSM003550.0763961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4103136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.68E-6110135No hitNo description
SMARTSM00355130115135IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MATEEAITSS NNGFVENPVD PEAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG  60
HNLPWKLKQR TNKEVKKRVY VCPEKTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC  120
SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR AFCDALAEET ARVNAVSSIN  180
NLAAGSINYH LMGNPLGPTM AQHFSTIFKP ISSNDHQTRQ GGVSLWMNQG VPQVSEAMGN  240
NIQEIHQLRS VTSSGAMFGD LLAVSCSHAP PSDHYQLNWP VFGNKISSNN AHEELTSTLV  300
LPLTNVKEAA AASQLASVPS LYSTQQQQSH QTTSANMSAT ALLQKAAQIG ATSTDPSFLG  360
SFALKSNANK VQDGNKFCGL YGSSPVSTNP ASDVENSGSD QISSLNQLQM YPKRQKIFQS  420
DQDSPAGGQT RDFLGVGRAN SSGSKARVLH LLSSIIAFVS RRDSFITHRA FCDALAEETA  480
RVNAVSSINN LAAGSINYHL MGNPLGPTMA QHFSTIFKPI SSNDHQTRQG GVSLWMNQGV  540
PQVSEAMGNN IQEIHQLRSV TSSGAMFGDL LAVSCSHAPP SDHYQLNWPV FGNKISSNNA  600
HEELTSTLVL PLTNVKEAAA ASQLASVPSL YSTQQQQSHQ TTSANMSATA LLQKAAQIGA  660
TSTDPSFLGS FALKSNANKV QDGNKFCGLY GSSPVSTNPA SDVENSGSDQ ISSLNQLQMY  720
PKRQKIFQSD QDSPAGGQTR DFLGVGVQAI CYPSSMNGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36111180372Zinc finger protein JACKDAW
5b3h_F1e-36111180372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043608.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-137IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLU5FMI70.0U5FMI7_POPTR; C2H2 family protein
STRINGPOPTR_0017s04840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-136C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]