PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1689aa    MW: 191002 Da    PI: 8.9633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012560.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003815981620323
                   ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                   Cp   Cgk F ++ +L++H r+H
  CCG012560.1 1598 CPvkGCGKKFFSHKYLVQHRRVH 1620
                   9999*****************99 PP

2zf-C2H211.60.0008816561682123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   y+C    Cg++F+  s++ rH r+  H
  CCG012560.1 1656 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1682
                   89********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.8E-142968IPR003349JmjN domain
PROSITE profilePS5118313.4953071IPR003349JmjN domain
PfamPF023753.9E-143164IPR003349JmjN domain
PROSITE profilePS5118434.529196365IPR003347JmjC domain
SMARTSM005581.8E-50196365IPR003347JmjC domain
SuperFamilySSF511974.39E-27210379No hitNo description
PfamPF023737.7E-37229348IPR003347JmjC domain
Gene3DG3DSA:3.30.160.608.3E-415671595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552015731595IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.38315961625IPR007087Zinc finger, C2H2
SMARTSM003550.004515961620IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015981620IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-515981619IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-916121654No hitNo description
Gene3DG3DSA:3.30.160.602.5E-816201647IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74116261655IPR007087Zinc finger, C2H2
SMARTSM003550.001416261650IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028016281650IPR007087Zinc finger, C2H2
SuperFamilySSF576676.48E-816441678No hitNo description
Gene3DG3DSA:3.30.160.603.7E-916481679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8516561682IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.46816561687IPR007087Zinc finger, C2H2
PROSITE patternPS00028016581682IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1689 aa     Download sequence    Send to blast
MAAPSGLSLD PPQPPTTAEV CQWLKNLPLA PEYRPTLSEF QDPIAYIFKI EKEASQYGIC  60
KIIPPVLPSA KKTTLSNLNR SLCARNGGSS APTFTTRQQQ IGFCPRKPRP VQKPVWQSGE  120
TYTFQEFETK ARVFEKNYLK KFSKKGALSP LEIETLYWKA TLDKPFSVEY ANDMPGSAFS  180
PRKKEGQGGV AGEGMSVGET EWNMRGVSRA KGSLLRFMKE EIPGVTSPMV YIGMMFSWFA  240
WHVEDHDLHS LNYMHMGAGK TWYGVPREAA VAFEEVVRVH GYGGEINPLV TFAVLGEKTT  300
VMSPEVFISA GVPCCRLVQN AGEFVVTFPR AYHSGFSHGF NCGEAANIAT PEWLMVAKDA  360
AIRRASINYP PMVSHFQLLY DLALEFCTRI PLNISAKPRS SRLKDKQKGE GEMLVKEQFV  420
KNMIQNNDLL HILGKGSSVV LLPRGSSDIS VCSKLRVGSQ LRDNPTLGLC SQKDVMKSLK  480
SSGSGDILQD KNQEINQVKG IFSAKAKFAS LCERNRFSTL NGNECSQSMN IGTERGRSIH  540
GDKLSDQRLF SCVTCGILSF DCLAIIQPKE AASRYLMSAD CSFFNDWVVG SGVTRDVFAV  600
AGGIANISEQ NSSRWVEKNT AAGFYDVPVQ SPNYPIQMAD QGVEMTSSSG KQLEASALGL  660
LALNYGNSSD SEEDQVEADL SHHDEINMTN CPLENKYQCQ SSAFPSYKQK DYDAATGGLP  720
QSPSRLDEWD DVPLKANDMY TENGDRRDNF KDKTDDTLEC SFGFPTGNLA SIESNSLDSR  780
YRDPMSMSHV SLNCSPIVHD IEKTKFNRPI APIENADMPF TQRSDKDSSC MHVFCLEHAV  840
EIEQQLRQIG GVHILLLCHP EYPRIEGEAK LVSEELGIDH LWNDITFRDA AKEDEERIQS  900
ALDSEEAIPG SGDWAVKLGI NLFYSANLSR SPLYSKQMPY NSVIYNAFGL ASSVSSTPKF  960
KVYGRRSGKP KKVVAGKWCG KVWMSNQVHP FLVIRDRVDQ DHEQEQERSF HASATPDEKL  1020
EKKPQTSNKT ETTRKSGRKR KITAGSRSIK KVKCLEAEEP DSEDSMGGNC HRQRVRVQNS  1080
KINEDTEREI SYDLVPDSHQ QHGRCRRKWA KSVESDDAVS DDPLAEHVRQ QYRRMRRSKQ  1140
AKSIKRENTV SYASVENKFQ KQLKRAHRSD RAKFFERQSA ASDNSLDDNS DQWHERAPRS  1200
TQAKYTESED AFSDDSPEES SRWLHGRVPK SKQLKYIDKE GVISDDSLES GSHQHNRRVS  1260
TGKRAQLIKR NDVVSDDSLD ESAYQRLPRF SRSKLAKLIE KENAVSDDSL DDNIHHHHGR  1320
VLKSKQAKFV EGEDAISDDS HDDNTDWQRK RIPRRKMAKF VESEDAASDD LQEDDTHQHR  1380
RRIPKSKKTN FIEREVVISD DLWENDTHRQ PRKAPRSKQA RFIVRDDLVS DDLLEDNSDQ  1440
QQKRILRSKP KKPATLCQMK QGTRKPKHIA PKMIKKETLK LIKQERQIKQ ETPQQRIGKS  1500
ELNARQFDSH SEEGVEGGPS TRLRKRPSKP PKQLETKLKE KQQNSRKKLK DASAVKAPVG  1560
RKNVKIKDEE AEYQCDIDGC TMSFGLKQEL AMHKRNICPV KGCGKKFFSH KYLVQHRRVH  1620
IDDRPLKCPW KGCKMTFKWA WARTEHIRVH TGARPYVCAE EGCGQTFRFV SDFSRHKRKT  1680
GHSAKKSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-79224207380Transcription factor jumonji (Jmj) family protein
6ip4_A4e-79224207380Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114501464KKPATLCQMKQGTRK
215231549RKRPSKPPKQLETKLKEKQQNSRKKLK
315361547KLKEKQQNSRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024100.10.0PREDICTED: lysine-specific demethylase JMJ705 isoform X1
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2K1XK920.0A0A2K1XK92_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]