PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 784aa    MW: 86006 Da    PI: 9.7788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012550.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014618641123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  +kC++C+k+F+   +L +H  + H
  CCG012550.1 618 WKCGYCKKHFRAEKYLDQHFDNrH 641
                  58*****************76666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF094292.7E-23782IPR019007WW domain binding protein 11
PfamPF126223.3E-11126181No hitNo description
PROSITE patternPS000280620641IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MKTTKGGKVM NPTDAYRKEL RKKELKRNKK ERKKVREVGI LKKDPDVIKE QIEKLDLMKA  60
DGALDKARKH KKRQLEDTLS LVIKKRREYE DKMKEKGETP VMFSHLGPLR RRTSAEEEER  120
ARHPKPEDSV YYHPTMNPTG APPPGKPPMY KSSIGPRIPL SGGSSSTAES EDAALVVPPP  180
LPESGELGPS DGSAIPALLP LPPPPPLPPM PAAPSLGMSL PPPPLPPPPP GPPPNDQVSS  240
HISVPPPPPL QQSAQPPPPP GTNESGSETT ISALLDESSS KDNAQVPASL PPPPPIAMQL  300
KSANSLSEGT SSEADANTAA TMDNPKMVPP PPPPRQQPLA PGQALTPTLQ PDVLPPGISR  360
FPPPPPPPNV RPPLSSSGIP GQVAPPGVML PLIPRPPYGP PPGPPPMMRP PLPPGPPPFF  420
QEDAANRPHV PQKPSYVKSA ASTVVKRPLA QHTPELTAMV PASVRVRREA AIPKPKPKAV  480
TSTTAVATRP AAPTTVKPES TNSSSAPKSK SIDDSYTAFL EDMKALVWFP FTLHFQHLTE  540
DVGEHVAART FNQEEGHAHK VHCSRERSRA AWQAIEEYLM PFVEREQYQI SSKCRLHPSN  600
DLFRDQEEHK IHVDINEWKC GYCKKHFRAE KYLDQHFDNR HYNLLNISDG KCLADLCGAL  660
HCDFMMDSKS TKTKCNPAAV AKNHHLCESL ADSCFPLNQG PSASRLHELF LHQFCDAHTC  720
SGKRKLFPKG GKKKTSVFYL AISILTMMMI PLFYLIVYLH QCEMRKGTQE LRRISKVGRK  780
TKPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17086KKRQLEDTLSLVIKKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of flowering time (By similarity). Plays an important role during the early flowering of precocious trifoliate orange (PubMed:21533840). {ECO:0000250|UniProtKB:Q9LV14, ECO:0000269|PubMed:21533840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024091.10.0PREDICTED: formin-like protein 5
SwissprotG3CHK51e-145ELF5_PONTR; Protein EARLY FLOWERING 5
TrEMBLA0A2K1XKA60.0A0A2K1XKA6_POPTR; Uncharacterized protein
TrEMBLA0A385JIQ40.0A0A385JIQ4_POPTO; Early flower 5
STRINGPOPTR_0015s10190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-109C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang JZ, et al.
    Molecular cloning and functional characterization of genes associated with flowering in citrus using an early-flowering trifoliate orange (Poncirus trifoliata L. Raf.) mutant.
    Plant Mol. Biol., 2011. 76(1-2): p. 187-204
    [PMID:21533840]