PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 377aa    MW: 41310.9 Da    PI: 6.8767
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012390.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.42.3e-2953164389
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k+ i++l+ ++ ++    + ++ +  +++s+++            
  CCG012390.1  53 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKTDIDKLPPLQMPPGFG-QFHQPVLFSHQSNIAspffdpnstfik 149
                  79*************************************************************7777622.333444444444444444444445555 PP

          TCP  89 ..............k 89 
                                 
  CCG012390.1 150 dvgynslgikidtgT 164
                  555555555443330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2654161IPR005333Transcription factor, TCP
PROSITE profilePS5136929.87454112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MISNSEDMDL QGKQAGGCGS EADKISEATS STSSRQWSAF RNPRIVRVSR SFGGKDRHSK  60
VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLDATKTDID KLPPLQMPPG  120
FGQFHQPVLF SHQSNIASPF FDPNSTFIKD VGYNSLGIKI DTGTAGLDGQ VQNSSTTMPR  180
SSYSRDIEAS IRAKSKQDGT ITEKGKSIKT NEDGEIGSYS STGQVPAQNF FPSANRSTIP  240
SLLYNSTVPF NSYHWDASNL SLSTQFGSHG FISQTENSLD TPSSLPLSSG SQLFFCPPPP  300
MPSLFPSYRP CVITPSENES RDMNHFQLLS SSSSQHILPI SLTMNSTTKP FSLNLNPGLL  360
RLQKNNESNP DEDDAES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1859113155Putative transcription factor PCF6
5zkt_B3e-1859113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2822580.0GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822590.0GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence.
GenBankGU2822600.0GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822620.0GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015070.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_011015071.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A2K1XIN30.0A0A2K1XIN3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5