PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012332.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 244aa    MW: 26865.2 Da    PI: 5.3643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012332.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-194392255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r +r++lg+f+t  eAa a++aa++kl+g
  CCG012332.2 43 TYKGVRQRT-WGKWVAEIREP---N-RgARIWLGTFDTSHEAATAYDAAARKLYG 92
                 69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-2242102No hitNo description
SMARTSM003801.0E-3643106IPR001471AP2/ERF domain
PROSITE profilePS5103222.33943100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3043101IPR001471AP2/ERF domain
PfamPF008477.9E-144392IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2143100IPR016177DNA-binding domain
PRINTSPR003675.9E-104455IPR001471AP2/ERF domain
PRINTSPR003675.9E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGMSKSTTS GFGEKKQFKK PAQASSRKGC MRGKGGPENA LCTYKGVRQR TWGKWVAEIR  60
EPNRGARIWL GTFDTSHEAA TAYDAAARKL YGPEAKLNLP ELQVNNCQFP ASPANFQATQ  120
MTCQPCQIIH NCSSTTSACS SNTPSIESIE MAPMLYNHDP IMYFSNESVD SGGMEAVNEV  180
NFGRSEVEIK EFWSNFNVNI PFDDSIWVEA AMSINFPVVE DPGIFASNLM EGTGRDTLQA  240
PWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1844100360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-1844106668ATERF1
3gcc_A7e-1844106668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559610.0EF155961.1 Populus trichocarpa putative DRE-binding protein 5 (DREB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048848.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ28e-51DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA9XBG61e-157A9XBG6_POPTR; Putative DRE-binding protein 5
STRINGPOPTR_0005s25470.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]