PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 202aa    MW: 22209.5 Da    PI: 6.4973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012200.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-053658123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  CCG012200.1 36 YTCTFCRREFRSAQALGGHMNVH 58
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-63363No hitNo description
Gene3DG3DSA:3.30.160.609.5E-43461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1573663IPR007087Zinc finger, C2H2
SMARTSM003550.00663658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MWNPKQTQED DDSWEVRAFA EDTGNINGTT WPPRSYTCTF CRREFRSAQA LGGHMNVHRR  60
DRARLHQTQP GSTNPHSLTS SSSSSTLIIP TQEFPPNSGL CLLYQLPNPN GVFTPTNMTA  120
CSIDSSSTLI SITPYPHNNL VGPSLNFPVA PPEISTSHCC SNIKAEPSAS TDHSNGIKNN  180
NCKELANEEL DLELRLGHRS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133158229superman protein
2l1o_A2e-133158229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533381e-180HM453338.1 Populus trichocarpa palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015014.11e-148PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_011028187.11e-148PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLB9N2N51e-145B9N2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09000.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-41C2H2 family protein