PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 292aa    MW: 31888.3 Da    PI: 7.6617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011260.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019109131123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  CCG011260.1 109 FPCNFCKREFSTSQALGGHQNAH 131
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-4104135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-6105136No hitNo description
PfamPF139121.2E-5108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.406109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
METVGTERCP SEGSSISATS EGTPHRDGSE LDQTEMVNTN MKEKVVQGSE PALLPKSSAR  60
VLLDLKLSRD NSIRGSKLEF NLFSPMNVGS SHAKESTDET LKQTESRVFP CNFCKREFST  120
SQALGGHQNA HKQERTLAKR RQEMDVGALV HLPYYPYSSL STNPYYGSLN RSLGVRLDSL  180
IHKTSPPYSW TSPIGLRYGA HGGWSGQTTM NTQPSNGRLT TESLDAFSGG FGISSSSSSS  240
RFEDNLLRNF GSPPSSNSVA VNKPPGTDHM RQTDLPKSYQ TDDSGLDLSL KL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020213.10.0PREDICTED: zinc finger protein 3-like
TrEMBLA0A2K1ZXT90.0A0A2K1ZXT9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s06260.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-24C2H2 family protein