PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010237.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 419aa    MW: 47816.1 Da    PI: 7.4121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010237.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05166189123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C+ Cg+ ++++ +Lk+H +  H
  CCG010237.2 166 YVCGVCGRKCKTNLDLKKHFKQlH 189
                  9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0067808296IPR019775WD40 repeat, conserved site
Gene3DG3DSA:3.40.50.10102.4E-686156IPR029060PIN domain-like
PROSITE profilePS5015710.679166194IPR007087Zinc finger, C2H2
PROSITE patternPS000280168189IPR007087Zinc finger, C2H2
CDDcd061677.16E-13180320No hitNo description
Gene3DG3DSA:3.40.50.10102.4E-6251316IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTPLCKAIDT TTASLLKPSI LLHRTPLNFC HSLNYTPNLS SSNLALTSKP PQTHLRPITA  60
TANASHPAAT SEIDMVKNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAV ALKTVAQRFG  120
EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKEIV SPSQPYVCGV CGRKCKTNLD  180
LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKIGYGLAA  240
ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREANLG  300
TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKSRW RSEDLENDGG LFSVTDFDED  360
GDYGGNDLEG FVDGLVMARS GFNGTRISAF SEGEEEHEQD YLLYDSEYEE IEFEDEGFW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029510.10.0PREDICTED: uncharacterized protein LOC105129232
TrEMBLU5FNF90.0U5FNF9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-160C2H2-like zinc finger protein