PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 336aa    MW: 37805.4 Da    PI: 9.2867
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009896.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.18.4e-1719107282
     trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                  Wt +e+++Liea+r ++er  +++          + +W++v ++++++ + rs++qC++kw+nl ++ykk+++ e+k +++ +++ +y+
  CCG009896.1  19 WTVSETMVLIEAKRMDDERRMKRSdsaegrskPTELRWKWVEDYCWKQECLRSQNQCNDKWDNLMRDYKKVRDYERKIAETGERNGSYW 107
                  *************96666655422233333338899*****************************************977766655554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9571183IPR017877Myb-like domain
PfamPF138372.3E-111896No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMADQGGKSL IREYKKGNWT VSETMVLIEA KRMDDERRMK RSDSAEGRSK PTELRWKWVE  60
DYCWKQECLR SQNQCNDKWD NLMRDYKKVR DYERKIAETG ERNGSYWKLE KNERKERNLP  120
SNMLPQIYEE LVQVVERRGG QQRMLTAAGG SGSNPNTGYV VERPITDVQP SVLPPLLQHQ  180
VSAAPTPALP LPPPRPPPSQ QPQAQPPPPI QFPESFRTVD SDTSEYSDSP AKRRRRGGEG  240
GEGTSGGTAS ASTSQEVGTA ISKSASIIAE AIQACDEREE RRHRDLLSLH ERRLKIEESK  300
TEINRQGISG LVDAINKLAN SILALASHKN QSSGPK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084850.0AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001296.10.0PREDICTED: protein enabled homolog isoform X2
TrEMBLU5FZS60.0U5FZS6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-60Trihelix family protein