PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 377aa    MW: 41212.8 Da    PI: 8.9017
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009830.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31259312255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+v +Ltl+hvkSHLQ+YR+
  CCG009830.1 259 PRMRWTSSLHSRFVHAVELLGGHERATPKSVLELMDVRDLTLAHVKSHLQMYRT 312
                  9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-15256313IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28257313IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-24259312IPR006447Myb domain, plants
PfamPF002495.5E-7260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSQKGIFDKQ SLNLIPDLSL HISLPNSAPS SICTGTNDGD SAFDIWRKDD VLIKSRSDSS  60
IRVGSQISDT ELSLANPTST AALEAESPWR INYGGRGTGS LEDHHHDQAR QRNLLLQRSS  120
NGQMSHINHG ISVLDVTGSK PIKGIPVYNS WNSSGDHNID PRFSFNQMPY SPSCTPYSSS  180
NSSADHHTST LQAYRMGTSA PRLNGMSMES LRVPQYHQYH QYGAAAGVGG GGAELYGSSG  240
MIRSRFMPKL HSKRNMRAPR MRWTSSLHSR FVHAVELLGG HERATPKSVL ELMDVRDLTL  300
AHVKSHLQMY RTVKSTDCRP TASSDGSGDE DFVSGTACIA QNANYLLNQK GGSKVLNLQH  360
DNGCPNSPTT LWSNSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-17260314357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17260314357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17260314357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17260314357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047796.10.0PREDICTED: transcription repressor KAN1-like
TrEMBLA0A2K1XH990.0A0A2K1XH99_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-52G2-like family protein