PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 383aa    MW: 43824.8 Da    PI: 8.8157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009745.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.4e-19282372498
                  E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae++  g     s  ++l+ ++g++W v++ yr+++    +++GW eF  +n+L egD++vF+l ++++  l+v+vfr
  CCG009745.1 282 VLRPSYLYRGCIMYLPSGFAEKNlnG----LSGFMKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLKSRDVVLKVTVFR 372
                  78899******************643....34469999***********666665..5699*********************999888889999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.004117100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-142098IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-142298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-102398No hitNo description
PROSITE profilePS508638.64224100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-25271372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-25273372IPR015300DNA-binding pseudobarrel domain
CDDcd100178.15E-24277372No hitNo description
SMARTSM010198.2E-22279374IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775279374IPR003340B3 DNA binding domain
PfamPF023625.0E-17282372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGTKYLILLW GKWSLTWFGF LQRIPDNFVK KFGHDISSFV RLIVPGGHVS RIGLIKADEK  60
LWFHDGWQQF VERFAIHIGY FLIFQYEGNA IFNVHIFNLP TSEINYHSNS LSGKIYLAFE  120
ELEDDDSAAS SGTPTTQLMV NKSYNPPALQ NLLSGSKLNN CLNWGGEENM RLTKSANVSQ  180
VANESARNVF AQYNEHKNSQ EEVKLYSPDG ETPKLKKRGR KRLKVDPHEQ QLSSPNEDDG  240
EMRFRFYESA SARKRTVTAE ERERAMNAAK AYAPDNPYCR VVLRPSYLYR GCIMYLPSGF  300
AEKNLNGLSG FMKLQLPDGK QWPVRCLYRG GRAKFSQGWY EFTLENNLGE GDVCVFELLK  360
SRDVVLKVTV FRVLEDGGLM NHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-7424537515144B3 domain-containing transcription factor VRN1
4i1k_B8e-7424537515144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001170.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-127VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2K2AUR80.0A0A2K2AUR8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]