PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009371.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 566aa    MW: 64690 Da    PI: 6.9149
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009371.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix803.4e-25421491171
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                  +W+k+ev aLi++r+++e ++++  lk+plWeevs  m++ g++rs+k+Ckekwen+nk+++k +e+ k++
  CCG009371.1 421 KWPKDEVEALIQVRSRIEIKFQEPGLKGPLWEEVSFLMSSMGYQRSAKRCKEKWENINKYFRKARESPKRG 491
                  7*****************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.12414478IPR017877Myb-like domain
PfamPF138373.8E-17420490No hitNo description
CDDcd122033.85E-24420485No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MQPSYGLPNI DHHHHQQQQR QQHLMEDDYS CSPSVLPISN LQNLNYPYQP HLHHHLQQQH  60
KHPHQVLLQQ HHQLFYPFQQ QQQVQGQSQD QVNPSLFSVN FKWGRDYEDS GYKKAGALNN  120
QEEAASTTTN TTTFLDGNVH SNPPHPILMP HSWHPREDST TIKEPFWKQL NKQLSGNEEK  180
EINESKTSYF SPLDMEQVVD GSSEGCKNLE SKFPLFNELQ AIYSLAQIAE ANQTGSGSVL  240
TCDNSPTNAG LSIPCNASNG QNVGACGAAN NVIGVDRGSE NSIGEEASLR KCRRRKRKGK  300
LKEKLNYIAG FFENSVKKVM NHQEMLHRKF LEVIEKMDKE RAEREATWRR QEAEKYSREA  360
ISLAHERASA SSREAQIISY IEKITGQSIN LTRMAPPLLQ PEISNEPIKE ITPTKTDSHS  420
KWPKDEVEAL IQVRSRIEIK FQEPGLKGPL WEEVSFLMSS MGYQRSAKRC KEKWENINKY  480
FRKARESPKR GGIEFGTKKQ GYTELFEVFS VRRDYLANVR NPLGVSVISS DMGSSRSEFD  540
GFSDQNTELE EGSSEQDIEA YKDDKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289297RKCRRRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019357.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLB9HD130.0B9HD13_POPTR; Uncharacterized protein
STRINGPOPTR_0006s23800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-37Trihelix family protein