PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008636.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 215aa    MW: 24010 Da    PI: 8.6912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008636.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-055880123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  CCG008636.1 58 YTCSFCKREFKSAQALGGHMNVH 80
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-65584No hitNo description
PfamPF139121.4E-65881IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1775885IPR007087Zinc finger, C2H2
SMARTSM003550.00325880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMERKSLSSN VNGHSNIGSK ACNDNDKKKK LRDSWNFCSC QSNGHDYLGG LSWPPRLYTC  60
SFCKREFKSA QALGGHMNVH RRDRARLRLS PPRDDQYPIL TLNLNPNPSF CTPFNCTIPS  120
LVTPPLTALS TPSLASEVRK WTVGGNPLDP SSPNLSDLTT NGSRKSFFEN FDGFTRQDGF  180
KIWNKGEIVR LDLDIGLASD SKDDLDLELR LGSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135380229superman protein
2l1o_A5e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9873010.0JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029856.11e-157PREDICTED: transcriptional regulator SUPERMAN-like isoform X1
TrEMBLR4L8301e-142R4L830_POPTO; Superman
STRINGPOPTR_0008s16390.16e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-36C2H2 family protein