PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008602.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 197aa    MW: 22042.9 Da    PI: 11.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008602.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-052747323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C +C+++F++   L  Hi +H
  CCG008602.1 27 CRICDRVFTSVQALIDHIESH 47
                 ******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3492552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTGFGWSLRH GNTLGSKRPL LPSQIACRIC DRVFTSVQAL IDHIESHMVE DVETARWKNG  60
LSFSSSRADP LVNTFSFGPS TTPRLPQTGF LGHSRYNFLS STERNPAFSP RTPQNIASAQ  120
PIIRTPQSQR SSLARNKYTV GSQHVPFALP TQPKVTREPH SIDRTRPFLR QLERPFSSGG  180
NHGKRSYAET LDLTLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030483.14e-65PREDICTED: uncharacterized protein LOC105129916
TrEMBLB9HKH61e-130B9HKH6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16800.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14890812