PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008251.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 190aa    MW: 20740 Da    PI: 10.0019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008251.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000734870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k F++   L  H  +H
  CCG008251.1 48 FSCKTCNKNFPSFQALGGHRASH 70
                 89**********99999998887 PP

2zf-C2H212.60.0004295117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F+    L  H+r+H
  CCG008251.1  95 HQCSICGLEFPLGQALGGHMRRH 117
                  79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-946117No hitNo description
SMARTSM003550.464870IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-114872IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139123.2E-1094119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.09995122IPR007087Zinc finger, C2H2
SMARTSM003550.07595117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKRDREEAEL DLAKCLMLLS KVGKADHEIL TNYTSAAATA GAGAGRSFSC KTCNKNFPSF  60
QALGGHRASH KKPKLMESTG NLLKLPNSPS KPKTHQCSIC GLEFPLGQAL GGHMRRHRAP  120
NNVDTTSTSS KDHELAVTQP PFLPAVPVLK RSNSSKRVLC LDLSLALPMY QNDSELQLEK  180
VARPMLKCFI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM1729490.0FM172949.1 Populus tremula x Populus alba partial mRNA for putative Cys2/His2 zinc finger protein (ZFP2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000297.11e-139PREDICTED: zinc finger protein ZAT11
TrEMBLA0A2K2C2J01e-121A0A2K2C2J0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24250.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-43C2H2 family protein