PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007803.1
Common NameSUP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 213aa    MW: 23840.7 Da    PI: 7.797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007803.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-055678123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F+++  L  H+++H
  CCG007803.1 56 YTCSFCRREFKSPQALGGHMNVH 78
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-65382No hitNo description
PROSITE profilePS5015711.0325683IPR007087Zinc finger, C2H2
SMARTSM003550.00455678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MERNSFSSSL EDHSIGSEAC NNTNSNKKLR DSWNLSSCQS FGEDYLDSLS WPPRSYTCSF  60
CRREFKSPQA LGGHMNVHRR DRARLRRSPP RDAQCPVPNL SPNPSLCPPF TRTLPSLVSP  120
PLSALSTPPL ASEVKKWTID GTILDPSSSE LSDLTTTGTR KSFFTTENFG GFTQQDGFKI  180
WKKAEIVRLD LEIGLVRDSK DELDLELRLG SLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125178229superman protein
2l1o_A1e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8317570.0KC831757.1 Populus euphratica isolate b SUP1 (SUP1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030533.11e-154PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM9W6M71e-150M9W6M7_POPEU; SUP1
TrEMBLM9WE191e-150M9WE19_POPEU; SUP1
STRINGPOPTR_0010s08530.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Song Y, et al.
    The SUPERMAN gene family in Populus: nucleotide diversity and gene expression in a dioecious plant.
    Plant Cell Rep., 2013. 32(8): p. 1277-88
    [PMID:23588495]