PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007802.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 193aa    MW: 21802.6 Da    PI: 6.0302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007802.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164062123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  CCG007802.1 40 YECSFCKRGFTNAQALGGHMNIH 62
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.2E-73766No hitNo description
Gene3DG3DSA:3.30.160.607.2E-53864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0094062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5314067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESAKQQSSE TSSTEENYDR QEQVKEDLSS RTTISAKRSY ECSFCKRGFT NAQALGGHMN  60
IHRKDRANRT KDKQLANSSS VSSKASEEIK NPRYMVPNSS EPTKYYPVSE AQGNYGMYFQ  120
QPGSSPRDPY SYKHDSHDFL VPRSDQSLSM NDELWGTSIG LQIGSSNIQD NGGNRRVSDD  180
DEVDLELRLG HDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030532.11e-143PREDICTED: transcriptional regulator SUPERMAN
TrEMBLB9HUB71e-121B9HUB7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08520.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-16C2H2 family protein