PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007701.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 363aa    MW: 40387.2 Da    PI: 7.9886
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007701.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.13.3e-3048149266
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................. 65 
                   g+kdrhsk++T +g+RdRRvRls+ +a++++dLqd+LG+ ++sk ++WLl++ak+ i+el+ +                                  
  CCG007701.1  48 FGGKDRHSKVCTIRGLRDRRVRLSVATAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDELPPLpvlvpgnfslnhqamlgssqfgkevfkmsnninw 145
                  689*************************************************************7766665555544444444444444433333333 PP

          TCP  66 ...s 66 
                     s
  CCG007701.1 146 edpS 149
                  3220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.83450108IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2850174IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MITSSKEVDC PPKKEGGTND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVATAIQLYD LQDRLGLNQP SKVVDWLLNA AKHDIDELPP LPVLVPGNFS  120
LNHQAMLGSS QFGKEVFKMS NNINWEDPSA FPRPNLWNAG AFCRAKSKEV VMDPVNEKEN  180
WTKRIEEDKQ DSNIEGNSTA QVSSSSFLHR ASHSSLPSLI NNAMPYGSFF HLEPPNFPLS  240
DHMENHGFST QTGDIHNLNA VPLSSALSLS SGSQFFVCPP GTTQSYFPSH VTASMENDPR  300
QINHFQVLTP STQNLFPNSL TPSPYHESQP MKPSHYFRAT PSRLHSDQNS ESPPDKDPEF  360
PCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1855109155Putative transcription factor PCF6
5zkt_B1e-1855109155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000070.10.0PREDICTED: transcription factor TCP13-like
TrEMBLB9IK870.0B9IK87_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-47plastid transcription factor 1