PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 192aa    MW: 22029.8 Da    PI: 5.7603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007645.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.71e-2761301128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 
                  lppGfrF P+deelvv++L++k++  +++  +vi+++++y ++Pw+L+       k+ +e k+ yf+s+r +        n++t++g Wk   g+ +e
  CCG007645.1   6 LPPGFRFCPSDEELVVHFLHRKAALLRCHP-DVIPDLGLYPYDPWQLDGtysilsKALSEGKKRYFYSRRTQ--------NKITSNGCWKpMAGRGEE 94 
                  79*************************999.99**************8446666655557789999999854........77999*****65566666 PP

          NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +  ++++vg+k+ + fy   + +g +t+Wvm+eyrl
  CCG007645.1  95 LVLAsdSNKTVGTKNYFLFY---TADGIRTNWVMEEYRL 130
                  6555468889**********...68899*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-362159IPR003441NAC domain
PROSITE profilePS5100534.9726160IPR003441NAC domain
PfamPF023651.5E-197130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGSVNLPPGF RFCPSDEELV VHFLHRKAAL LRCHPDVIPD LGLYPYDPWQ LDGTYSILSK  60
ALSEGKKRYF YSRRTQNKIT SNGCWKPMAG RGEELVLASD SNKTVGTKNY FLFYTADGIR  120
TNWVMEEYRL SGFGTSASTK TRNRQKQDYS KWVICRVYER DLDEDDSGTD QLSCLDEVFL  180
SLDDLDEISL PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-24216011168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707962e-46AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046125.11e-136PREDICTED: NAC transcription factor ONAC010-like isoform X2
SwissprotQ8GWK62e-68NC104_ARATH; NAC domain-containing protein 104
TrEMBLB9GF871e-130B9GF87_POPTR; Uncharacterized protein
STRINGPOPTR_0001s21440.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-70xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]