PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007252.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 682aa    MW: 76340.4 Da    PI: 7.4355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007252.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00097798223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC++C++ F ++ n++rH+r+H
  CCG007252.1 77 KCSKCSREFCSSINYRRHLRVH 98
                 7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.34676103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MPVVKPVSSI IDVMRPGEGN DSSLDTFIRD AIGKQPLLSF SRPNDNPVQW IQLLHALDQP  60
DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD  120
KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SALLDLVQGR  180
PSRFPLSSGQ LFSILDDASE KTLLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKE  300
CIEDMLEAVP QAEQSCPLAI SDSDTLGSEI LPDDVPSFLE PLQLPRTDED FDLENQMGCG  360
GGRSMLQGKS HMHIVVARWH GPSKSQRNHL SYGFHANQNS HAPKPGTIQK HGNQRDFKPG  420
PVMNGNRKWS RKPKPEYNGE SLKARMQKEV INVLDHDKKG EVLIGSISVT LGDCSHDEGN  480
NLDGARDDCL VDHEILKKKN VQEKHNRPDS VQYGTNHSTV KLWRPVSRNG SKDLMLVENG  540
RRECQHDNID GKGEDQNFND SSLRSCAMDN NFGGMENGSL PGGLLPGVLQ LTSHEARAFL  600
AERWKEAIAA EHVKLALSPD YQIATNHSSD TSKHNDISSA ENQLVNVEAQ EPLTSGAGRA  660
KYKTKPDNGV KLKYIPKQRT II
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030138.10.0PREDICTED: uncharacterized protein LOC105129670
TrEMBLA0A2K1YDH30.0A0A2K1YDH3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-127C2H2-like zinc finger protein