PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006851.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 366aa    MW: 40597.8 Da    PI: 7.1732
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006851.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-1574161186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ +++s+k   qCk++++ ++k+yk +k+ + ++  + +s++p+fd l+
  CCG006851.1  74 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFDPLD 161
                  7*************************************867778877754449********************97..67779*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-2572163No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDDDDDIQSH SNTTESSSPS PSPPPPNGRI TVTVPATATV PPPPPPQQTD NSLALVLPTK  60
SKANGSGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKDVAEI VSSREDYSKS  120
AKTDIQCKNR IDTVKKKYKL EKAKMASGGG VSSWPFFDPL DRLIGSTARV PAVGSGSKFP  180
FAIPVRVRSS SRRGGTNQYH FRRNQNMKAR KWGKDDDDDD DDEEEEEEEE EEEDGSFPPQ  240
KKRRVVVERE AGGKGGGGKE KKGGWGNSIR MLTQAMLKFG EAYEQAETAK LQQVVEMEKT  300
RMKFSKELEL QRMQFFMQTQ MEISQLKNGR KGGNASGNHH HHHHHHHTGN NNITASNNVN  360
NSDSDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251257GGKGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297748.21e-151hypothetical protein POPTR_0001s06330g
SwissprotQ9LJG82e-93ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9GM191e-151B9GM19_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06330.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-55sequence-specific DNA binding transcription factors