PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 161aa    MW: 17582.4 Da    PI: 5.6627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006780.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000283052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C + F++   L  H++ H
  CCG006780.1 30 YACSFCRRGFTNAQALGGHMNIH 52
                 89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-52854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-72856No hitNo description
PROSITE profilePS5015711.3023057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDISLTSTGK SDQKACSSDD LQGSSHVRPY ACSFCRRGFT NAQALGGHMN IHRRDRAKLK  60
QALNENFLSL NITKSTEEIS SAPVTPSTPS IEDDCATPRN KASEEFQQLP FIVDAKVGTD  120
GSEEDKMELN QATSQAGLDL ELRLGSEPHE SSTRSSTRKF S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260RRDRAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013939.11e-117PREDICTED: transcriptional regulator TAC1-like
TrEMBLB9IFX21e-107B9IFX2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10480.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.18e-30C2H2 family protein