PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006474.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 185aa    MW: 20408.1 Da    PI: 10.2121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006474.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32119176359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  CCG006474.1 119 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 176
                  99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.7E-1870115IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-34105177IPR003657WRKY domain
PROSITE profilePS5081130.641112178IPR003657WRKY domain
SuperFamilySSF1182903.53E-28115177IPR003657WRKY domain
SMARTSM007742.9E-39117177IPR003657WRKY domain
PfamPF031063.8E-28119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKQQAEMMFG KSTSGISLNF DSSSCTPTMS STRSFLSSLS IDGNVANLEG SAFHLTGAAR  60
SSDQSSQQHK RKCSGRGEDG SIKCGSSVRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD  120
YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP ARKHVERCLE DPSMLIVTYE GEHNHPRIPA  180
QSTNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22105180276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297780.0CT029778.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026033.11e-136PREDICTED: probable WRKY transcription factor 21
RefseqXP_011026034.11e-136PREDICTED: probable WRKY transcription factor 21
RefseqXP_011042509.11e-136PREDICTED: probable WRKY transcription factor 21, partial
SwissprotO043361e-97WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9H8I21e-128B9H8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24100.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-92WRKY DNA-binding protein 21