PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 623aa    MW: 68107.5 Da    PI: 7.4989
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006216.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.72.8e-40782222105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++          
  CCG006216.1  78 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETVEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSIPsqlrsgsfsp 175
                  789******************************************************************99988888888888777777776667777 PP

          TCP  89 ..............................kaaksaakskksqksaa 105
                                                +++ +a+ + k++ +++
  CCG006216.1 176 nfslqqrsrslfpgigletsqpptflsfqsSNNLNAMMQAKQELRDN 222
                  77777666566666655444444444433211111113333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-4282251IPR005333Transcription factor, TCP
PROSITE profilePS5136927.2184138IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEGGDDQLHH YHHKHRPNFP FQLLEKKEDE PCSSSSPYPS LPISTTEPDN DNNSNKTNAN  60
LSTSNLQIVS AEQSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTKELGHKSD  120
GETVEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSIPSQLRS GSFSPNFSLQ  180
QRSRSLFPGI GLETSQPPTF LSFQSSNNLN AMMQAKQELR DNSSLELSTE TEESFNRKRR  240
PELDLSSSQQ HQMGSYLLQS SSGAVPASHG QIPANFWMLA NSNNNQVMSG DPIWTFPSVN  300
NSGLYRSTMS SGLHFMNFPA PVTLLPSQQL GSTSIGGSSA GNSGMSELGH LNMLAGLNPY  360
RASGISESQA SGSHSHHGGG GGGSDDRHDT TKHLSLIIIV CAISFIFSFP FWPKLLLLLL  420
LPVIQFMCFN GVGENDIYTH AIVVMLYGWF VKAGERDEID NFVTAMQCSV AFSHILIPNL  480
CHESQGFTAS MIKIFFQREG GGTQTLSVPA VGSGGGPRCR SLPEPMYNVT DKEVDHSSLF  540
FFYGKFYNAA AIETLTRGVS FFKSHTASGC RCQIAASLVQ QGKENRSKEE EFLELAKEKV  600
VQRGNRYVPD RAAIGESNYA ISF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027800.10.0PREDICTED: transcription factor TCP14-like
RefseqXP_011027801.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z004e-63TCP14_ARATH; Transcription factor TCP14
TrEMBLU5GE740.0U5GE74_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.18e-51TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]