PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 360aa    MW: 38340.5 Da    PI: 6.508
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006044.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.82.7e-3682171391
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                  ++k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++  +++ +  ++++  ++a 
  CCG006044.1  82 AQKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIVAATGTGTVPAIAVsVNGTLKIPTESPATEAAD 171
                  689************************************************************777774432111111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3086180IPR005333Transcription factor, TCP
PROSITE profilePS5136926.81687141IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSQNHHHTI EEIDQEHSIT VANVSNQPDR TTLQLKEETL TEPEGSRELE EHDNNVRRIN  60
NSSSNSCLVV HQVQRQQQVV MAQKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH  120
KSDGETIRWL LEHAEPAIVA ATGTGTVPAI AVSVNGTLKI PTESPATEAA DSDADGLVHK  180
KKRKRPCNSD FVDLTEAAHQ NSVSSGLAPI ASTSPQGLVP LWPMGTFVFP QGSSVGVGGS  240
NQAQFWAFPA TSTTPFFNMA ARPISSFVSA MQPGVQLAGN VSVDFGDAGG ELLGSGGSPP  300
NTIGSMSSSS SGSSAAAACG GGGGAQLLRD FSLEIYDKKE LQFFSHPVNH DHQQAPCSES
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041616.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT895e-84TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A3N7G1I00.0A0A3N7G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.23e-78TCP family protein