PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 217aa    MW: 24652.3 Da    PI: 6.9423
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005216.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-12686383
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                 ++++++d  ++g l++p   +     ++ +s+ + + d +g++W + +++ r+ s +++l+ GW +Fv++ gL++ D v+++
  CCG005216.1  6 SKFLTADDIENG-LSIPGCSLGPLPFQEGQSMNMHVHDGNGQEWIFSCTIkRNESMGHFLSVGWIKFVRERGLRVDDKVTIH 86
                 566688888888.99998888777788999******************885666666***********************98 PP

2B333.57.4e-111291852883
                  --..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  28 gkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   ++ +s+ + + d +g++W + +++ r+ s +++l+ GW +Fv++ gL++ D v ++
  CCG005216.1 129 FQEGQSMNMHVHDGNGQEWIFSCTIkRNESMGHFLSVGWIKFVRERGLRVDDKVSIH 185
                  467899*****************885666666********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-9486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10488IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-95111No hitNo description
PfamPF023622.9E-10686IPR003340B3 DNA binding domain
PfamPF023621.8E-8117185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-8130187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-7134185IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGQEWIF SCTIKRNESM  60
GHFLSVGWIK FVRERGLRVD DKVTIHEEAM KNQATGTWIK MEVKRKIRLF DDIENGLSIP  120
GCSLGPLPFQ EGQSMNMHVH DGNGQEWIFS CTIKRNESMG HFLSVGWIKF VRERGLRVDD  180
KVSIHEEAMK NQATGTCIKV EVKRKIRLFG EDVWADV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.13e-59PREDICTED: uncharacterized protein LOC105109425
TrEMBLU7DUM17e-70U7DUM1_POPTR; Uncharacterized protein
STRINGPOPTR_0601s00200.11e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519