PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005211.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 14130.3 Da    PI: 8.8462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005211.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.3e-13686386
                 EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                 k+l +sdv ++  l lp +++++   g+   ++ l+++de+g +W++++++  ++ +r vl + W  Fv+++gLk+gD++v+ +++
  CCG005211.1  6 KKLNTSDVDRK--LLLPENCLKNLpRGQ---ETFLKIKDEDGIVWTFRCKIpPGGHSRPVLYGDWFLFVRQKGLKVGDIIVIVFNK 86
                 78888999887..9*****996555444...456***************9976666679*********************998655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.462106IPR003340B3 DNA binding domain
SMARTSM010190.009496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-15488IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-14590No hitNo description
SuperFamilySSF1019362.88E-13586IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-10686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MEEVTKKLNT SDVDRKLLLP ENCLKNLPRG QETFLKIKDE DGIVWTFRCK IPPGGHSRPV  60
LYGDWFLFVR QKGLKVGDII VIVFNKQKAR AAADTSRDHF EIKQSNTEEF FYSLECPYKF  120
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.11e-35PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG36e-63A0A2K2AYG3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00430.14e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527