PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005182.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 311aa    MW: 33817.6 Da    PI: 7.2159
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005182.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005130152123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++sF++   L  H  +H
  CCG005182.1 130 YECKTCNRSFPSFQALGGHRASH 152
                  99**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-13129154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-8129152No hitNo description
SMARTSM003550.06130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-8206233No hitNo description
PfamPF139121.3E-11210235IPR007087Zinc finger, C2H2
SMARTSM003550.058211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDMEAQDDFV GSNDLTQIIK GKRTKRQRSS SPYMVMTSSS SSGCGGGDGG GERGVLIEEH  60
GSISSPTTSS EVSERTEEEE DIANCLILLA QGDRPKQIHE HKSGEVEKFR ARKSSDMSTP  120
TLNKAGFFVY ECKTCNRSFP SFQALGGHRA SHKKPKATAE EKKGPVVASM EDLGVCQLIK  180
RSNLDPSLSL QIGHNNNNVN KGFQGNKAKT HECSICGSEF MSGQALGGHM RRHRANTGNQ  240
AGMITTDSSS ATAESNIHGD HHQIKPKNIL ALDLNLPAPE DDHHLRESNF QFTSTRQALV  300
FSATALVDCH Y
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471530.0EF147153.1 Populus trichocarpa clone WS01228_G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028268.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA9PFN00.0A9PFN0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-52C2H2 family protein