PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005156.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 200aa    MW: 21388 Da    PI: 9.7685
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005156.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.21.9e-2750128566
          TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................s 66 
                  +++++++hTkv gR+RRvR++a++aar+F+L +eLG+ +d++tie Ll+ a+++i++ tgt                 s
  CCG005156.1  50 TSQSKDRHTKVHGRGRRVRIPALTAARVFQLPRELGHRSDGETIEGLLRHAEASIIASTGTgpipsipisttvgstpiS 128
                  5689*********************************************************555444444444332220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2352144IPR005333Transcription factor, TCP
PROSITE profilePS5136921.72153107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MASETVLYNF SSTSNTQHQQ PSPNSNNSVV PSPTTGGSQS KLTHLRKSTT SQSKDRHTKV  60
HGRGRRVRIP ALTAARVFQL PRELGHRSDG ETIEGLLRHA EASIIASTGT GPIPSIPIST  120
TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA  180
TVAVDAEEGR QQELTGEHKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2092280.0AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013539.11e-144PREDICTED: transcription factor PCF1-like
SwissprotO238758e-30PCF1_ORYSJ; Transcription factor PCF1
TrEMBLB9N7J51e-126B9N7J5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s11350.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.13e-26TCP family protein