PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003421.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 280aa    MW: 29170.6 Da    PI: 7.219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003421.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05149170223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ Cg++F ++     H+r H
  CCG003421.1 149 TCSTCGRTFASWKAVFGHMRAH 170
                  6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.995148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTNNNNNDNK DAAAIPDKAT EHSEAANSPR RNPNDQEEAI APPRPTVQRS TLETGGPSSV  60
SGPAGPAGTE VGASPAAVTL TSGASPSTPV RIGGSGTAVV DPSTTVAATG VAGEGSSSRK  120
RSGKGEESSP HVSKKAKGEM DINPDAEPTC STCGRTFASW KAVFGHMRAH PDRGWRGAFP  180
PPEWSPEKPT DQQGDQSALR SQLAPRLLNL AINTLNRMKH DQGHEAGSST NRRNFDLNTE  240
PPRESESNSG SSSPPSSGNR FDLNKPPKAD HNNGNEGASK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022151.10.0PREDICTED: uncharacterized protein LOC105124026
TrEMBLB9H6611e-169B9H661_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10330.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-14C2H2 family protein