PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003334.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 271aa    MW: 27656.9 Da    PI: 10.3893
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003334.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.41.2e-3835125289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 
                  a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s    +
  CCG003334.1  35 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSItslS 125
                  78*******************************************************************8883333333333222222321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3341128IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2094195IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSDNSGAVNN GALIDPQRNQ PPGGGGGGAT NGALAVKKPP SKDRHSKVDG RGRRIRMPII  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV SVRAGGNSNS  120
ITSLSSNNVH SAASLDHKPL LGPAPFILGK RMRPEEDGNG GKDDGGVPVG PTIGSLMGPT  180
ATAAAGSGGF WALPARADFW GFAAAPPEMV VQPTAVQQSS LFMHQQHAAA AAAMGEASAA  240
RLGNYLPGHL NLLASLSGGS GSSGRREEDQ R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022018.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX23e-93TCP7_ARATH; Transcription factor TCP7
TrEMBLB9H5Q11e-148B9H5Q1_POPTR; TCP family protein
STRINGPOPTR_0005s09250.21e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-55TCP family protein