PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 152aa    MW: 16775.4 Da    PI: 5.066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002237.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181767255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++AeIrd +    + +r +lg+f taeeAa+a++ a+ +++g
  CCG002237.1 17 RYRGVRRRP-WGKFAAEIRDSTR---HgARLWLGTFNTAEEAARAYDGAAYSMRG 67
                 59*******.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-221776IPR016177DNA-binding domain
PfamPF008473.6E-141767IPR001471AP2/ERF domain
SMARTSM003801.5E-321780IPR001471AP2/ERF domain
CDDcd000181.13E-261775No hitNo description
PROSITE profilePS5103223.7361775IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-301776IPR001471AP2/ERF domain
PRINTSPR003671.9E-111829IPR001471AP2/ERF domain
PRINTSPR003671.9E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDHPNIGKVN QKGEEIRYRG VRRRPWGKFA AEIRDSTRHG ARLWLGTFNT AEEAARAYDG  60
AAYSMRGPLA ILNFPGEYPK TKVDSDITSS SISSSPLSSS SSSSCASSSS MSQNAERSGI  120
GQGKEVFEIE YLDDKLLEDL LDFEEENSKK SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-331413611114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029077.11e-109PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K2BD462e-74A0A2K2BD46_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04040.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]