PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002224.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 184aa    MW: 20721.4 Da    PI: 4.802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002224.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000193355123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  CCG002224.1 33 YECVFCKRGFTTAQALGGHMNIH 55
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-63159No hitNo description
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MESNQHDEES KSSSDEEEIT DRSDQDTGAG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
KSRPSSVPSL SSKVDEDYAS FQGYPPIQSY PPHYPTPHEV HINYQTFFPA STTWGIGSPY  120
AQQHNGDFYV QSPHHLYPLG DDWRRSLSLQ IGPSHVDDNT KEKIEDGIGA DDELDLELRL  180
GHDP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2083750.0AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028771.11e-136PREDICTED: zinc finger protein JAGGED-like
TrEMBLB9GS391e-132B9GS39_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04250.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein