PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002206.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 350aa    MW: 38955.1 Da    PI: 10.2693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002206.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32284341359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  CCG002206.1 284 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 341
                  99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819956.8E-5128192No hitNo description
PfamPF105332.7E-18235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.4E-34270342IPR003657WRKY domain
PROSITE profilePS5081130.641277343IPR003657WRKY domain
SuperFamilySSF1182901.16E-27280342IPR003657WRKY domain
SMARTSM007742.9E-39282342IPR003657WRKY domain
PfamPF031061.2E-27284341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGVEEANRA AVESCHRVIS LLSQPQDQVQ YRNIMVETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKLPTP LSQSILLDNS LNRTGYTSKT PQFLQSSSYQ ESHPIQEWGS SAKNCLSLGT  120
PSLELSSAGK NPLQLGQPTS AANYQFLQLQ QQQLHRQQLQ QQQQQMKQQA EMMFRKSNSG  180
ISLKFDSSSC TPTMSSTRSF MSSLSMDGSV ANLEGSGFHL MGPARSSDQS SQQHKRKCSG  240
RGEDGSVKCG SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH PRIPAQSANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-212783451076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297780.0CT029778.1 Poplar cDNA sequences.
GenBankCT0297790.0CT029779.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028741.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_011028744.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-128WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9GS590.0B9GS59_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-116WRKY DNA-binding protein 21