PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001434.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 359aa    MW: 41082.8 Da    PI: 6.7329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001434.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001282304123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  CCG001434.1 282 FMCRKCGKAFAVRGDWRTHEKNC 304
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64198225IPR007087Zinc finger, C2H2
SMARTSM003550.58198220IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6198217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SMARTSM00355310244277IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-6264302No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5278302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808282302IPR007087Zinc finger, C2H2
SMARTSM0035549282302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADPYSNFFT GWVKFNNNPL QHYPSPPQQL PYTHNFYSST TLPANHNQPY FHYYQNPPRS  60
PPLKEALPLL RLSPTRQGKE QDQQQQDDEE EEEEEEIQEL SCRVMDVDKI KYRAKDQESF  120
FSSCSANNKE EEESVSVALH IGLPSPSAAE MATVLSSSSE ITDKDGDGDD SVYPISRLNK  180
GQYWIPTPSQ ILIGPTQFSC PVCCKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML  240
RLPCYCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH  300
EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG SGHAAYGNDG FEEEDEPSSD VEQDNESMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033300.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-145ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9II500.0B9II50_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-145C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]