PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 466aa    MW: 53569.5 Da    PI: 6.5969
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001354.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.3e-2494193186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                  +Wt+++v++Li a+ +++++++++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++d 
  CCG001354.1  94 KWTDHMVRLLIMAVFYIGDDVGSEGsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQNLLDT 191
                  7*******************997533666777888888**********************************************559*****999999 PP

     trihelix  85 le 86 
                  ++
  CCG001354.1 192 MD 193
                  97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2192218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGSGMLGLEL PLHQPENPQN PNHMNHPQVV AYTHHESDHR QHSQQSVKQA YPYASSTKPK  60
QLLSPLSDED EPSFTGDDST TEGKRKMSPW QRMKWTDHMV RLLIMAVFYI GDDVGSEGSD  120
PIGKKKPGGL AQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC  180
RVVENQNLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH NSCGHAPSWV AFGSNHSPEM  240
ATGPSHAHAQ QHQRCSHSTE NAQVVTNSRT ETEGSKMAKR AINEEDEVDD DDDDDSDNDE  300
DDYEDDGDEA IEGNSRHQSG HGQGDEDNRD EKSSRKRPRK DVFSATSSLM QQLNGEIMNV  360
LQDVAKSSWE KKHWMRLRLM QLEEQQVSYQ CQAYDLEKQR LKWVKFSSKK EREMERAKLE  420
NERRRLENER MVLIVRKKEL ELLDTQHQQQ QQLPSNKRSD TSSIAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012418.10.0PREDICTED: uncharacterized protein LOC105116670
TrEMBLU5GA650.0U5GA65_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-79sequence-specific DNA binding transcription factors