PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001173.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 214aa    MW: 23707.7 Da    PI: 9.7898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001173.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236082123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C + F ++  L  H++ H
  CCG001173.1 60 YECQYCYREFANSQALGGHQNAH 82
                 99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-65787No hitNo description
Gene3DG3DSA:3.30.160.605.4E-45886IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-56084IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6766087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDSIGCLTKS NTITSNNTTL KLFGFNISEN NPTLPLDSSK SPSGSQEPET SFQSSKGRKY  60
ECQYCYREFA NSQALGGHQN AHKKERQLLK RAQMQATRRL ALASYVTIPN SMFSTFIPSP  120
PHLLDPAGVP VEAARQQHTQ SPPWFYKSYL GRMSRDGRYL NGPASIPGRC LDGKSNLVCS  180
EAGLRARAFP VSGFAREDVE PHHRHKGLGL DLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021265.11e-160PREDICTED: zinc finger protein 6-like
TrEMBLA0A2K1X6P11e-152A0A2K1X6P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15460.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.15e-13C2H2 family protein