PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001155.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 298aa    MW: 32388.9 Da    PI: 8.123
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001155.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.2e-314107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  CCG001155.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksSESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVE 101
                  6*********************9999777899****************************************************************** PP

       DUF260  94 lallke 99 
                  ++l ++
  CCG001155.1 102 AVLKGA 107
                  998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381559.7E-951297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0683109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS SESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQAAV EAVLKGAPIT PINSEAAVNG  120
HGPPLKVYDI RHVSKEENSA ASNDANRART RCRVRRVVKP KASKRACFGN GLASIAVDTL  180
SARDELTRCT SHESSVSHQS ELAVLDGDSK ESDESMVSVE TAEASLLFPP NPESKNDCKA  240
HDVASNGISG LELGLDLTLG FEPVSRAHHV VPVKKRRVEA YGSCDVDTCK MELRLEYP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442340.0EF144234.1 Populus trichocarpa clone PX0011_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021242.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-111LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA9P7Z50.0A9P7Z5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-108LOB domain-containing protein 41