PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 331aa    MW: 38164.8 Da    PI: 4.8187
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000940.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.6e-36211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed+++++++sws+ +nsf+++d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++i+
   CCG000940.1  21 FLTKTYDIVEDASTNHIVSWSRGNNSFIIWDPQAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKHLLKSIR 108
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG000940.1 109 RRKA 112
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3815105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6017110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.57E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASTAIPQPM EGLRDSVPPP FLTKTYDIVE DASTNHIVSW SRGNNSFIIW DPQAFSTSLL  60
PRFFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KHLLKSIRRR KAPQTQTSQQ  120
ALEACVEVGT FGADGEVNRL RRDKQVLMVE LVKLRQQQQT TKACLQLIEQ KLKRTENKQQ  180
QMMSFLARAM QNPYFVQQLA QQKEMRKELE EAISKKRRRP IDQGRSNFEV AEFGHGEGVG  240
TFVKIEHQEF GDLSEFDVPE FHNPAMNMQG LSENQLINLV EERIEEGEEH ENKGNEIDEG  300
FWEDLLNEDI DEEIAVLGSE GEDEEDVLSV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D6e-231911027129Heat shock factor protein 1
5d5v_B6e-231911027129Heat shock factor protein 1
5d5u_B6e-231911027129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139860.0KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027100.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-136HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0N7DMJ10.0A0A0N7DMJ1_9R
STRINGPOPTR_0008s15740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-131heat shock transcription factor A6B