PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000778.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 246aa    MW: 27008.4 Da    PI: 7.6949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000778.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002694116123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  CCG000778.1  94 FSCNYCRRKFYSSQALGGHQNAH 116
                  89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-692122No hitNo description
PROSITE profilePS5015711.38594121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MISPKSKLDF ENDLEVSSQV ASNISVHELS PDPFKDSTTP SHLTDLVKHQ ENPVPVSLDL  60
SLHFNSSEIE LKGTGQKSIE VAAHTPATTI PRVFSCNYCR RKFYSSQALG GHQNAHKRER  120
TMAKRAMRMG MFSDRYTNLA SLPLNGSAFR SLGIKAHAAM HQSIIQSQTP PVTRGGARFE  180
QGYYGTPMFM EDDDVGPCWP GSFRQVGEAV GGNSVLEMAQ SPNMNFEARA PPPRTDSSAP  240
DLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2259071e-84CU225907.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024534.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_011024541.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392639e-45ZFP4_ARATH; Zinc finger protein 4
TrEMBLB9HJJ41e-173B9HJJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13730.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-47zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]