PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 244aa    MW: 26718.2 Da    PI: 7.987
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000626.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.41.5e-304107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG++g+++++++  +q++++
  CCG000626.1   4 SCNGCRVLRKGCSDNCTIRPCLqwiktPDSQANATLFLAKFYGRAGLVNLIEAGPPKLRPAIFRSLLYEACGRIVNPVYGSAGMLWSGNWAQCQAAVD 101
                  6***********************************************************************************************99 PP

       DUF260  94 lallke 99 
                  ++l ++
  CCG000626.1 102 AVLKGS 107
                  988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6723109IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKT PDSQANATLF LAKFYGRAGL VNLIEAGPPK  60
LRPAIFRSLL YEACGRIVNP VYGSAGMLWS GNWAQCQAAV DAVLKGSPII SLPSSSEVPA  120
PHLISSLNTY DIRHVSRDHD SPELTKVKNQ ARFKRSVATR PNSQSEPTSR VNPGGWGFEP  180
VRDSCLGHLG NGGSYIKDED SIFSVETVEG SLWSQVEPDR FFKFNGQGDD SDVRLDLTLG  240
LVSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013419.10.0PREDICTED: LOB domain-containing protein 42-like
RefseqXP_011022127.10.0PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA307e-73LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2K1ZFW61e-172A0A2K1ZFW6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11950.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-75LOB domain-containing protein 42