PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000272.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 717aa    MW: 78392.1 Da    PI: 6.3295
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000272.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10290346155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  CCG000272.1 290 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 346
                  57*******************4444.2455535555.7799999*************98 PP

2AP246.68.2e-15389440155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG000272.1 389 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 440
                  57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-18290356No hitNo description
PfamPF008473.6E-8290346IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-14290356IPR016177DNA-binding domain
SMARTSM003809.1E-22291360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-11291355IPR001471AP2/ERF domain
PROSITE profilePS5103217.016291354IPR001471AP2/ERF domain
PRINTSPR003673.9E-6292303IPR001471AP2/ERF domain
CDDcd000181.06E-24389450No hitNo description
PfamPF008471.0E-9389440IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17389450IPR016177DNA-binding domain
SMARTSM003801.5E-33390454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18390449IPR001471AP2/ERF domain
PROSITE profilePS5103219.045390448IPR001471AP2/ERF domain
PRINTSPR003673.9E-6430450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MASTNNWLGF SLSPQELPSS QSDHQDHPQN TDSRLRFHSD EISGTDVSGE NFDLTSDSTA  60
PSLNLPASFG ILEAFRNNQS QAWNNMKRSG INEDTNYNTT SDVPIFMGSS CNSQNIDQNQ  120
EPKLENFLGG HSFGNHEHKL NVCSTMYDST GHYMFHNCSL QLPSEDASNE GTGSNGGADT  180
SINNNNTNSS IGLSMIKTWL KNQPAPTQQD TSNKSNGGAQ SLSLSMSTGS QSGSDLPLLA  240
VNGGGNRTRG EQSSSDNNKQ QKTTPSLDSQ TGAIEVVPRK SIDTFGQRTS IYRGVTRHRW  300
TGRYEAHLWD NSCRREGQTR KGRQGGYDKE DKAARAYDLA ALKYWGTTTT TNFPISNYEK  360
EIEEMKHMTR QEHVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  420
FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVNSIIES STLPIGGAAK RLKEAEHAEI  480
TTHVQRTDDH DSTSSQLTDG ISNYGTAAHH GWPTIPFQQA QAFTMHYPYG QRLWCKQEQD  540
SDNHSFQELH QLQLGNTQNF LQPSVLHNVM SMDSSSVEHS SGSDSVMYSS GGHDGTGTGT  600
NGSYQGIGYG SNTGYAVPMA TVIANDGSTP DQGNGYGDGE VKALGYENMF SSDPYHARNL  660
YYLSQQSSAG VIKAGAYDQG STCNNWLPTA VPTIAARSNS MAVCHGAPTF TVWNEST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007180.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HHX90.0B9HHX9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-126AP2 family protein