PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000251.1
Common NameDREB2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 287aa    MW: 31739.8 Da    PI: 4.8643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000251.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1778128155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p     r  r +lg+f ta+eAa a+++a++ ++g
  CCG000251.1  78 CNYRGVRQRT-WGKWVAEIREPD----RgPRLWLGTFPTAYEAALAYDNAARTMYG 128
                  56*****999.**********82....34***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.49E-3178138No hitNo description
PfamPF008474.4E-1278128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2079137IPR016177DNA-binding domain
SMARTSM003807.2E-3579142IPR001471AP2/ERF domain
PROSITE profilePS5103221.45679136IPR001471AP2/ERF domain
PRINTSPR003671.4E-98091IPR001471AP2/ERF domain
PRINTSPR003671.4E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTLIQGSNA TSMSMDSSKK RKRASNKSVA ETLQKWKEYN EYLDAQGDEG NKPVRKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPDR GPRLWLGTFP TAYEAALAYD  120
NAARTMYGPR ARLNIPDVVN STSSSKDNFS AVTPSYYYSA ASPADSVTTS THSEVCAYED  180
PNQNVLSHAE DWMTNISSQA EVCEQNASSQ TEVYEQNVSS QHVEDCSRGV EKNSKLSQDE  240
LKIQPENPSW ANDCHDYGWD EIFSVEELLG DIDSGMTGAE GYFSLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1879141568ATERF1
3gcc_A1e-1879141568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3371910.0DQ337191.1 Populus euphratica dehydration responsive element binding protein (DREB2) gene, complete cds.
GenBankEF1371760.0EF137176.1 Populus euphratica dehydration responsive element binding protein (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004133.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_011004213.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA1XCN00.0A1XCN0_POPEU; Dehydration responsive element binding protein
STRINGPOPTR_0008s07360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-36ERF family protein
Publications ? help Back to Top
  1. Chen J,Xia X,Yin W
    Expression profiling and functional characterization of a DREB2-type gene from Populus euphratica.
    Biochem. Biophys. Res. Commun., 2009. 378(3): p. 483-7
    [PMID:19032934]